Biophysical modelling of a drosophila photoreceptor

It remains unclear how visual information is co-processed by different layers of neurons in the retina. In particular, relatively little is known how retina translates vast environmental light changes into neural responses of limited range. We began examining this question in a bottom-up way in a relatively simple °y eye. To gain understanding of how complex bio-molecular interactions govern the conversion of light input into voltage output (phototransduction), we are building a biophysical model of the Drosophila R1-R6 photoreceptor. Our model, which relates molecular dynamics of the underlying biochemical reactions to external light input, attempts to capture the molecular dynamics of phototransduction gain control in a quantitative way

Overexpressing temperature-sensitive dynamin decelerates phototransduction and bundles microtubules in drosophila photoreceptors

shibire(ts1), a temperature-sensitive mutation of the Drosophila gene encoding a Dynamin orthologue, blocks vesicle endocytosis and thus synaptic transmission, at elevated, or restrictive temperatures. By targeted Gal4 expression, UAS-shibire(ts1) has been used to dissect neuronal circuits. We investigated the effects of UAS-shibire(ts1) overexpression in Drosophila photoreceptors at permissive (19 degrees C) and restrictive (31 degrees C) temperatures. At 19 degrees C, overexpression of UAS-shi(ts1) causes decelerated phototransduction and reduced neurotransmitter release. This phenotype is exacerbated with dark adaptation, age and in white mutants. Photoreceptors overexpressing UAS-shibire(ts1) contain terminals with widespread vacuolated mitochondria, reduced numbers of vesicles and bundled microtubules. Immuno-electron microscopy reveals that the latter are dynamin coated. Further, the microtubule phenotype is not restricted to photoreceptors, as UAS-shibire(ts1) overexpression in lamina cells also bundles microtubules. We conclude that dynamin has multiple functions that are interrupted by UAS-shibire(ts1) overexpression in Drosophila photoreceptors, destabilizing their neural communication irreversibly at previously reported permissive temperatures

Network adaptation improves temporal representation of naturalistic stimuli in drosophila eye: II Mechanisms

Retinal networks must adapt constantly to best present the ever changing visual world to the brain. Here we test the hypothesis that adaptation is a result of different mechanisms at several synaptic connections within the network. In a companion paper (Part I), we showed that adaptation in the photoreceptors (R1-R6) and large monopolar cells (LMC) of the Drosophila eye improves sensitivity to under-represented signals in seconds by enhancing both the amplitude and frequency distribution of LMCs' voltage responses to repeated naturalistic contrast series. In this paper, we show that such adaptation needs both the light-mediated conductance and feedback-mediated synaptic conductance. A faulty feedforward pathway in histamine receptor mutant flies speeds up the LMC output, mimicking extreme light adaptation. A faulty feedback pathway from L2 LMCs to photoreceptors slows down the LMC output, mimicking dark adaptation. These results underline the importance of network adaptation for efficient coding, and as a mechanism for selectively regulating the size and speed of signals in neurons. We suggest that concert action of many different mechanisms and neural connections are responsible for adaptation to visual stimuli. Further, our results demonstrate the need for detailed circuit reconstructions like that of the Drosophila lamina, to understand how networks process information

A possible source mechanism for magnetotail current sheet flapping

The origin of the flapping motions of the current sheet in the Earth's magnetotail is one of the most interesting questions of magnetospheric dynamics yet to be solved. We have used a polar plane simulation from the global hybrid-Vlasov model Vlasiator to study the characteristics and source of current sheet flapping in the center of the magnetotail. The characteristics of the simulated signatures agree with observations reported in the literature. The flapping is initiated by a hemispherically asymmetric magnetopause perturbation, created by subsolar magnetopause reconnection, that is capable of displacing the tail current sheet from its nominal position. The current sheet displacement propagates downtail at the same pace as the driving magnetopause perturbation. The initial current sheet displacement launches a standing magnetosonic wave within the tail resonance cavity. The travel time of the wave within the local cavity determines the period of the subsequent flapping signatures. Compression of the tail lobes due to added flux affects the cross-sectional width of the resonance cavity as well as the magnetosonic speed within the cavity. These in turn modify the wave travel time and flapping period. The compression of the resonance cavity may also provide additional energy to the standing wave, which may lead to strengthening of the flapping signature. It may be possible that the suggested mechanism could act as a source of kink-like waves that have been observed to be emitted from the center of the tail and to propagate toward the dawn and dusk flanks.Peer reviewe

Use of Meixner functions in estimation of Volterra kernels of nonlinear systems with delay

Volterra series representation of nonlinear systems is a mathematical analysis tool that has been successfully applied in many areas of biological sciences, especially in the area of modeling of hemodynamic response. In this study, we explored the possibility of using discrete time Meixner basis functions (MBFs) in estimating Volterra kernels of nonlinear systems. The problem of estimation of Volterra kernels can be formulated as a multiple regression problem and solved using least squares estimation. By expanding system kernels with some suitable basis functions, it is possible to reduce the number of parameters to be estimated and obtain better kernel estimates. Thus far, Laguerre basis functions have been widely used in this framework. However, research in signal processing indicates that when the kernels have a slow initial onset or delay, Meixner functions, which can be made to have a slow start, are more suitable in terms of providing a more accurate approximation to the kernels. We, therefore, compared the performance of Meixner functions, in kernel estimation, to that of Laguerre functions in some test cases that we constructed and in a real experimental case where we studied photoreceptor responses of photoreceptor cells of adult fruitflies (Drosophila melanogaster). Our results indicate that when there is a slow initial onset or delay, MBF expansion provides better kernel estimates

Visual Coding in Locust Photoreceptors

Information capture by photoreceptors ultimately limits the quality of visual processing in the brain. Using conventional sharp microelectrodes, we studied how locust photoreceptors encode random (white-noise, WN) and naturalistic (1/f stimuli, NS) light patterns in vivo and how this coding changes with mean illumination and ambient temperature. We also examined the role of their plasma membrane in shaping voltage responses. We found that brightening or warming increase and accelerate voltage responses, but reduce noise, enabling photoreceptors to encode more information. For WN stimuli, this was accompanied by broadening of the linear frequency range. On the contrary, with NS the signaling took place within a constant bandwidth, possibly revealing a ‘preference’ for inputs with 1/f statistics. The faster signaling was caused by acceleration of the elementary phototransduction current - leading to bumps - and their distribution. The membrane linearly translated phototransduction currents into voltage responses without limiting the throughput of these messages. As the bumps reflected fast changes in membrane resistance, the data suggest that their shape is predominantly driven by fast changes in the light-gated conductance. On the other hand, the slower bump latency distribution is likely to represent slower enzymatic intracellular reactions. Furthermore, the Q10s of bump duration and latency distribution depended on light intensity. Altogether, this study suggests that biochemical constraints imposed upon signaling change continuously as locust photoreceptors adapt to environmental light and temperature conditions

Refractory sampling links efficiency and costs of sensory encoding to stimulus statistics.

Sensory neurons integrate information about the world, adapting their sampling to its changes. However, little is understood mechanistically how this primary encoding process, which ultimately limits perception, depends upon stimulus statistics. Here, we analyze this open question systematically by using intracellular recordings from fly (Drosophila melanogaster and Coenosia attenuata) photoreceptors and corresponding stochastic simulations from biophysically realistic photoreceptor models. Recordings show that photoreceptors can sample more information from naturalistic light intensity time series (NS) than from Gaussian white-noise (GWN), shuffled-NS or Gaussian-1/f stimuli; integrating larger responses with higher signal-to-noise ratio and encoding efficiency to large bursty contrast changes. Simulations reveal how a photoreceptor's information capture depends critically upon the stochastic refractoriness of its 30,000 sampling units (microvilli). In daylight, refractoriness sacrifices sensitivity to enhance intensity changes in neural image representations, with more and faster microvilli improving encoding. But for GWN and other stimuli, which lack longer dark contrasts of real-world intensity changes that reduce microvilli refractoriness, these performance gains are submaximal and energetically costly. These results provide mechanistic reasons why information sampling is more efficient for natural/naturalistic stimulation and novel insight into the operation, design, and evolution of signaling and code in sensory neurons

Propagation of a shock-related disturbance in the Earth's magnetosphere

The Grand Unified Magnetosphere-Ionosphere Coupling Simulation, version 4, magnetohydrodynamic simulation of the interplanetary shock event on 9 November 2002 is used to determine the shock-associated disturbance propagation characteristics inside the Earth's magnetosphere. Interaction of an interplanetary fast forward shock with the magnetopause caused a shock-related disturbance inside the magnetosphere that propagated at a speed significantly higher than that in the solar wind or magnetosheath. The propagation direction of the disturbance was calculated from the Rankine-Hugoniot conditions, velocity and magnetic coplanarity, and minimum variance analysis and is shown to vary in different regions of the magnetosphere. Furthermore, the impulse disturbance wave mode changes as the plasma and field conditions change inside the magnetosphere. These results bring important new information about the propagation processes that is not directly obtainable from point measurements made by (even several) spacecraft. On the other hand, comparison of ionospheric observations from the IMAGE magnetometer chain with geosynchronous data allow us to also interpret the double step structure observed at dayside geosynchronous orbit, which is below the simulation resolution. This combination provides us with quite a complete view on shock propagation inside the magnetosphere.Peer reviewe